Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NOR53_6Tetratricopeptide repeat domain protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. (509 aa)    
Predicted Functional Partners:
EED31684.1
Sensor protein GacS; [T] COG0642 Signal transduction histidine kinase.
   
 0.883
NOR53_398
PEGA domain family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
 0.870
NOR53_215
[T] COG0642 Signal transduction histidine kinase.
   
 0.809
EED33682.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.806
NOR53_230
Conserved hypothetical protein.
       0.797
NOR53_257
Hypothetical protein.
       0.776
NOR53_208
Hypothetical protein.
   
 
 0.641
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.610
NOR53_60
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
  
 
 0.610
NOR53_690
Hypothetical protein.
    
 0.599
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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