STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_618[E] COG3741 N-formylglutamate amidohydrolase. (281 aa)    
Predicted Functional Partners:
NOR53_497
C4-dicarboxylate anaerobic carrier; [C] COG2851 H+/citrate symporter.
 
     0.728
EED34043.1
Transcriptional regulator, GntR family; [K] COG2188 Transcriptional regulators.
 
 
 0.705
EED32226.1
[E] COG0070 Glutamate synthase domain 3.
     
 0.697
putA_1
Bifunctional PutA protein; [C] COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase.
     
 0.688
NOR53_499
[S] COG3812 Uncharacterized protein conserved in bacteria.
       0.586
accC
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
  0.585
EED33167.1
[M] COG1794 Aspartate racemase.
    
  0.570
EED31946.1
[S] COG3146 Uncharacterized protein conserved in bacteria.
  
     0.511
NOR53_548
Conserved hypothetical protein.
       0.484
EED33175.1
Amidohydrolase domain protein; [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
  
  
 0.472
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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