Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NOR53_516 | NOR53_633 | NOR53_516 | NOR53_633 | Exoribonuclease II; [S] COG1295 Predicted membrane protein. | Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS. | 0.411 |
NOR53_538 | NOR53_633 | NOR53_538 | NOR53_633 | UbiA prenyltransferase; [H] COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase. | Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS. | 0.461 |
NOR53_633 | NOR53_516 | NOR53_633 | NOR53_516 | Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS. | Exoribonuclease II; [S] COG1295 Predicted membrane protein. | 0.411 |
NOR53_633 | NOR53_538 | NOR53_633 | NOR53_538 | Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS. | UbiA prenyltransferase; [H] COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase. | 0.461 |
NOR53_633 | merA | NOR53_633 | NOR53_3056 | Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS. | Mercuric reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | 0.473 |
merA | NOR53_633 | NOR53_3056 | NOR53_633 | Mercuric reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS. | 0.473 |