STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_692DNA internalization-related competence protein ComEC/Rec2; [R] COG0658 Predicted membrane metal-binding protein. (732 aa)    
Predicted Functional Partners:
dprA
Peptide deformylase, DNA processing protein; [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
  
 0.858
EED32237.1
Phosphoribosyltransferase; [R] COG1040 Predicted amidophosphoribosyltransferases.
 
  
 0.857
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.836
EED32126.1
Hamp domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein.
  
  
 0.812
EED33059.1
MotA/TolQ/ExbB proton channel; [U] COG0811 Biopolymer transport proteins.
  
    0.802
EED33058.1
[U] COG0848 Biopolymer transport protein.
       0.802
EED33837.1
Type IV pilus biogenesis protein PilC; [I] COG0657 Esterase/lipase.
  
  
 0.753
EED33721.1
[J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
  
 0.739
gspF_2
General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF.
   
  
 0.721
gspF_1
General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF.
   
  
 0.721
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.