Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_748Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
EED33042.1
Hypothetical protein.
       0.799
NOR53_265
Conserved hypothetical protein.
  
     0.767
gspJ_2
General secretion pathway protein J.
  
     0.649
EED33040.1
Sodium:neurotransmitter symporter; [R] COG0733 Na+-dependent transporters of the SNF family.
       0.642
EED33039.1
[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis.
 
     0.613
NOR53_968
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.589
EED32548.1
Conserved hypothetical protein.
  
     0.579
EED31615.1
Conserved hypothetical protein.
  
     0.566
NOR53_41
Fimbrial assembly protein.
  
     0.548
NOR53_137
General secretion pathway protein I; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.539
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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