Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NOR53_780Transport-associated; [R] COG2823 Predicted periplasmic or secreted lipoprotein. (182 aa)    
Predicted Functional Partners:
EED33862.1
Hypothetical protein; [G] COG0279 Phosphoheptose isomerase.
 
    0.838
EED32439.1
[M] COG3317 Uncharacterized lipoprotein.
  
    0.613
EED33861.1
Conserved hypothetical protein TIGR00252; [L] COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
       0.589
EED32053.1
[S] COG1652 Uncharacterized protein containing LysM domain.
  
  
 0.540
EED33860.1
[R] COG3107 Putative lipoprotein.
  
    0.496
omlA
Outer membrane lipoprotein OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.483
sdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
  
     0.474
rsmI
Conserved hypothetical protein TIGR00096; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.423
EED31358.1
OsmC-like protein; [O] COG1764 Predicted redox protein, regulator of disulfide bond formation.
   
  
 0.402
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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