NOR53_874 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NOR53_874

Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS. (240 aa)

Predicted Functional Partners:

NOR53_857

0.773

htpX

0.625

EED33789.1

0.514

EED33790.1

0.506

merA

0.448

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED33789.1	EED33790.1	NOR53_1285	NOR53_1439	Conserved hypothetical protein.	[O] COG2214 DnaJ-class molecular chaperone.	0.937
EED33789.1	NOR53_874	NOR53_1285	NOR53_874	Conserved hypothetical protein.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	0.514
EED33790.1	EED33789.1	NOR53_1439	NOR53_1285	[O] COG2214 DnaJ-class molecular chaperone.	Conserved hypothetical protein.	0.937
EED33790.1	NOR53_857	NOR53_1439	NOR53_857	[O] COG2214 DnaJ-class molecular chaperone.	Peptidase S1 and S6, chymotrypsin/Hap; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	0.438
EED33790.1	NOR53_874	NOR53_1439	NOR53_874	[O] COG2214 DnaJ-class molecular chaperone.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	0.506
EED33790.1	htpX	NOR53_1439	NOR53_1870	[O] COG2214 DnaJ-class molecular chaperone.	HtpX domain protein; [O] COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.	0.582
NOR53_857	EED33790.1	NOR53_857	NOR53_1439	Peptidase S1 and S6, chymotrypsin/Hap; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	[O] COG2214 DnaJ-class molecular chaperone.	0.438
NOR53_857	NOR53_874	NOR53_857	NOR53_874	Peptidase S1 and S6, chymotrypsin/Hap; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	0.773
NOR53_857	htpX	NOR53_857	NOR53_1870	Peptidase S1 and S6, chymotrypsin/Hap; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	HtpX domain protein; [O] COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.	0.645
NOR53_874	EED33789.1	NOR53_874	NOR53_1285	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	Conserved hypothetical protein.	0.514
NOR53_874	EED33790.1	NOR53_874	NOR53_1439	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	[O] COG2214 DnaJ-class molecular chaperone.	0.506
NOR53_874	NOR53_857	NOR53_874	NOR53_857	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	Peptidase S1 and S6, chymotrypsin/Hap; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	0.773
NOR53_874	htpX	NOR53_874	NOR53_1870	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	HtpX domain protein; [O] COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.	0.625
NOR53_874	merA	NOR53_874	NOR53_3056	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	Mercuric reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.448
htpX	EED33790.1	NOR53_1870	NOR53_1439	HtpX domain protein; [O] COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.	[O] COG2214 DnaJ-class molecular chaperone.	0.582
htpX	NOR53_857	NOR53_1870	NOR53_857	HtpX domain protein; [O] COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.	Peptidase S1 and S6, chymotrypsin/Hap; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	0.645
htpX	NOR53_874	NOR53_1870	NOR53_874	HtpX domain protein; [O] COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	0.625
merA	NOR53_874	NOR53_3056	NOR53_874	Mercuric reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; CBS.	0.448