NOR53_877 protein (gamma proteobacterium NOR53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NOR53_877

ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea. (137 aa)

Predicted Functional Partners:

EED32948.1

0.935

EED32949.1

0.933

rimK_2

0.782

NOR53_463

0.597

EED32950.1

0.508

EED33720.1

0.457

Your Current Organism:

gamma proteobacterium NOR53

NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EED32948.1	EED32949.1	NOR53_1828	NOR53_1922	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Putative alpha-L-glutamate ligase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.956
EED32948.1	NOR53_877	NOR53_1828	NOR53_877	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	0.935
EED32949.1	EED32948.1	NOR53_1922	NOR53_1828	Putative alpha-L-glutamate ligase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.956
EED32949.1	NOR53_877	NOR53_1922	NOR53_877	Putative alpha-L-glutamate ligase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	0.933
EED32950.1	NOR53_877	NOR53_1532	NOR53_877	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	0.508
EED32950.1	rimK_2	NOR53_1532	NOR53_494	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.739
EED33720.1	NOR53_877	NOR53_1474	NOR53_877	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	0.457
EED33720.1	rimK_2	NOR53_1474	NOR53_494	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.709
NOR53_463	NOR53_877	NOR53_463	NOR53_877	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	0.597
NOR53_463	rimK_2	NOR53_463	NOR53_494	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.910
NOR53_877	EED32948.1	NOR53_877	NOR53_1828	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.935
NOR53_877	EED32949.1	NOR53_877	NOR53_1922	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	Putative alpha-L-glutamate ligase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.	0.933
NOR53_877	EED32950.1	NOR53_877	NOR53_1532	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	0.508
NOR53_877	EED33720.1	NOR53_877	NOR53_1474	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	0.457
NOR53_877	NOR53_463	NOR53_877	NOR53_463	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	0.597
NOR53_877	rimK_2	NOR53_877	NOR53_494	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.782
rimK_2	EED32950.1	NOR53_494	NOR53_1532	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	0.739
rimK_2	EED33720.1	NOR53_494	NOR53_1474	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	0.709
rimK_2	NOR53_463	NOR53_494	NOR53_463	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	Succinylglutamate desuccinylase/aspartoacylase; [R] COG3608 Predicted deacylase.	0.910
rimK_2	NOR53_877	NOR53_494	NOR53_877	[HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	ATP-dependent Zn protease; [O] COG4067 Uncharacterized protein conserved in archaea.	0.782