STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOR53_897[I] COG1562 Phytoene/squalene synthetase. (339 aa)    
Predicted Functional Partners:
EED32367.1
[Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.968
EED32397.1
Geranylgeranyl reductase; [C] COG0644 Dehydrogenases (flavoproteins).
 
 
 0.938
EED31294.1
Conserved hypothetical protein; [QR] COG0500 SAM-dependent methyltransferases.
    
 0.938
EED31436.1
[Q] COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.930
NOR53_743
[H] COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 0.911
erg
[I] COG3000 Sterol desaturase.
  
 0.885
NOR53_349
[I] COG3000 Sterol desaturase.
  
 0.885
EED31399.1
DNA polymerase III, epsilon subunit; [F] COG1428 Deoxynucleoside kinases.
  
 0.871
crtC
Hydroxyneurosporene synthase (CrtC).
 
  
 0.841
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.832
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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