STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspD_2General secretion pathway protein D; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (770 aa)    
Predicted Functional Partners:
gspC
General secretion pathway protein C; [U] COG3031 Type II secretory pathway, component PulC.
  
 
 0.936
NOR53_41
Fimbrial assembly protein.
 
  
 0.877
gspH_2
General secretion protein H; [NU] COG4970 Tfp pilus assembly protein FimT.
 
  
 0.866
gspG_2
General secretion pathway protein G; [NU] COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.862
NOR53_137
General secretion pathway protein I; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.856
gspJ_2
General secretion pathway protein J.
 
  
 0.784
gspG_1
General secretion pathway protein G; [U] COG4537 Competence protein ComGC.
  
 0.751
gspF_2
General secretion pathway protein F; [NU] COG1459 Type II secretory pathway, component PulF.
 
  
 0.707
gspE_2
General secretion pathway protein E (Type II traffic warden ATPase); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.704
NOR53_350
Conserved hypothetical protein.
       0.663
Your Current Organism:
gamma proteobacterium NOR53
NCBI taxonomy Id: 566466
Other names: g. proteobacterium NOR5-3, gamma proteobacterium NOR5-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.