STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF20370.1Regulatory protein SoxS; KEGG: bai:BAA_3894 8.8e-11 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K13530; Psort location: Cytoplasmic, score: 9.26. (107 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.843
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.840
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.840
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.813
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.813
EPF16582.1
KEGG: kva:Kvar_2922 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase.
     
 0.790
EPF14004.1
Putative glutamate synthase [NADPH], large subunit.
    
  0.772
EPF15631.1
Malate dehydrogenase; KEGG: enc:ECL_03760 0. malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Psort location: Cytoplasmic, score: 9.97.
   
 
 0.716
EPF20371.1
Redox-sensitive transcriptional activator SoxR; KEGG: eci:UTI89_C3737 0.00066 zntR; zinc-responsive transcriptional regulator K13638; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.654
EPF15223.1
Transcriptional regulator, AraC family; KEGG: lsp:Bsph_1999 5.7e-07 adaA; methylphosphotriester-DNA alkyltransferase K13530; Psort location: Cytoplasmic, score: 9.26.
  
     0.616
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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