STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF20574.1PemK-like protein 2. (116 aa)    
Predicted Functional Partners:
EPF20573.1
PemI-like protein 2.
 
 
 0.998
EPF20417.1
Transcriptional regulator, HxlR family.
   
    0.660
EPF20563.1
Transcriptional regulator, HxlR family.
   
    0.660
EPF18038.1
Transcriptional regulator, HxlR family; Psort location: Cytoplasmic, score: 9.26.
   
    0.660
EPF15220.1
Transcriptional regulator, HxlR family.
   
    0.660
EPF13637.1
Transcriptional regulator, HxlR family; Psort location: Cytoplasmic, score: 9.26.
   
    0.660
EPF18586.1
Toxin-antitoxin system, antitoxin component, AbrB family; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.497
EPF17899.1
Toxin-antitoxin system, toxin component, HicA family.
  
   
 0.496
EPF16342.1
Toxin-antitoxin system, toxin component, RelE family.
 
   
 0.483
EPF12966.1
Addiction module toxin, Txe/YoeB family; KEGG: eco:b4539 2.3e-28 yoeB, ECK2011, JW5331; toxin of the YoeB-YefM toxin-antitoxin system; K01175.
  
   
 0.466
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.