STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF20831.1Prepilin-type cleavage/methylation protein; Psort location: Extracellular, score: 9.71. (151 aa)    
Predicted Functional Partners:
EPF20829.1
Bacterial type II secretion system protein F domain protein; KEGG: apb:SAR116_2517 1.5e-38 type II secretion system PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.887
EPF13609.1
Prepilin-type cleavage/methylation protein; Overlaps another CDS with the same product name.
 
 
 0.887
EPF20830.1
Type 4 fimbrial assembly protein PilB family protein; KEGG: cco:CCC13826_1231 5.4e-82 L(+)-tartrate dehydratase subunit beta (L-TTD beta) K02454; Psort location: Cytoplasmic, score: 9.97.
  
 0.881
EPF15236.1
Hypothetical protein; Psort location: Periplasmic, score: 9.83.
  
     0.730
EPF13713.1
yecA family protein; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0149 family.
  
     0.641
EPF12652.1
Hypothetical protein.
  
     0.600
EPF13151.1
Type IV pilus secretin PilQ; Psort location: OuterMembrane, score: 10.00.
 
   
 0.594
EPF20832.1
KEGG: cro:ROD_01131 2.2e-131 nadC; nicotinate-nucleotide pyrophosphorylase [carboxylating]; K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating); Psort location: Cytoplasmic, score: 9.97; Belongs to the NadC/ModD family.
  
  
 0.533
EPF13280.1
Type 4 prepilin-like protein leader peptide-processing enzyme domain protein; KEGG: shn:Shewana3_0417 1.2e-36 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.518
EPF20833.1
Protein AmpD; KEGG: ctu:Ctu_07420 1.8e-81 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.509
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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