STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF20070.1Transcriptional regulator, GntR family; KEGG: hiq:CGSHiGG_02770 1.7e-06 D-mannonate oxidoreductase K13637; Psort location: Cytoplasmic, score: 9.97. (237 aa)    
Predicted Functional Partners:
EPF20071.1
KEGG: pva:Pvag_0247 9.2e-103 hyuE; hydantoin racemase; Psort location: Cytoplasmic, score: 8.96.
 
     0.920
EPF20072.1
KEGG: kva:Kvar_2516 4.8e-145 urate catabolism protein; Psort location: Cytoplasmic, score: 9.97.
 
    0.819
EPF20069.1
NCS1 nucleoside transporter family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.669
EPF17049.1
KEGG: apb:SAR116_0310 7.6e-09 transcriptional regulator, GntR family; Psort location: Cytoplasmic, score: 9.97.
  
     0.657
EPF20712.1
Nicotinamide-nucleotide adenylyltransferase.
   
  
 0.652
EPF17000.1
Transcriptional regulator, GntR family; KEGG: apb:SAR116_1743 4.7e-12 regulatory protein GntR, HTH:GntR, C-terminal; Psort location: Cytoplasmic, score: 9.97.
  
     0.651
prmB
(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
    
   0.601
EPF20800.1
Acetolactate synthase, small subunit; KEGG: seg:SG0118 2.9e-74 ilvH; acetolactate synthase 3 regulatory subunit; K01653 acetolactate synthase I/III small subunit; Psort location: Cytoplasmic, score: 9.97.
   
    0.516
EPF20077.1
SIS domain protein; KEGG: pva:Pvag_1686 1.9e-09 bifunctional protein glk; Psort location: CytoplasmicMembrane, score: 8.46.
  
   
 0.509
EPF19165.1
Putative L-lactate dehydrogenase operon regulatory protein; KEGG: sed:SeD_A0164 1.4e-35 pdhR; transcriptional regulator PdhR K05799; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.495
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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