STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF19198.1KEGG: mdi:METDI1668 1.1e-09 ABC transporter, permease component; putative taurine transporter K02050; Psort location: CytoplasmicMembrane, score: 10.00. (572 aa)    
Predicted Functional Partners:
EPF19199.1
KEGG: llo:LLO_3289 2.9e-60 ABC transporter, ATP-binding protein K02049; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.956
EPF19197.1
Hypothetical protein.
       0.475
EPF13642.1
KEGG: vfi:VF_1798 3.6e-30 clcA; chloride channel protein K03281; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.413
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.