STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF18572.1Transglycosylase SLT domain protein; KEGG: dno:DNO_0633 0.00013 lytic murein transglycosylase K08309; Psort location: Periplasmic, score: 9.76. (172 aa)    
Predicted Functional Partners:
EPF14982.1
Putative protein PrgJ.
  
    0.812
EPF15001.1
Putative type III secretion chaperone InvB.
   
    0.803
EPF15004.1
Type III secretion outer membrane pore, YscC/HrcC family; Psort location: OuterMembrane, score: 10.00.
 
  
 0.712
EPF12857.1
Hypothetical protein.
  
     0.695
EPF14981.1
Type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.603
EPF18582.1
Type III secretion outer membrane pore, YscC/HrcC family; Psort location: OuterMembrane, score: 10.00.
 
  
 0.586
EPF20145.1
KEGG: bpd:BURPS668_1897 1.2e-63 fimbrial usher protein K07347; Psort location: OuterMembrane, score: 9.48.
  
     0.563
EPF14983.1
Type III secretion apparatus needle protein.
  
  
 0.529
EPF20144.1
Gram-negative pili assembly chaperone domain protein; Psort location: Periplasmic, score: 9.99.
  
     0.511
EPF18019.1
Putative outer membrane usher protein PapC; KEGG: bpd:BURPS668_1897 3.0e-129 fimbrial usher protein K07347; Psort location: OuterMembrane, score: 10.00.
  
     0.495
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.