STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF16833.1Hypothetical protein. (53 aa)    
Predicted Functional Partners:
EPF16834.1
Transporter, major facilitator family protein; KEGG: tbi:Tbis_3467 1.4e-17 thymidylate kinase K00943; Psort location: CytoplasmicMembrane, score: 10.00.
       0.564
EPF16835.1
Hypothetical protein.
       0.564
EPF16836.1
Chitosanase domain protein; KEGG: sro:Sros_2053 4.7e-35 chitosanase.
       0.518
EPF16830.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.500
EPF16831.1
Cytochrome d ubiquinol oxidase, subunit II; KEGG: esa:ESA_01936 4.2e-153 hypothetical protein; K00426 cytochrome bd-I oxidase subunit II; Psort location: CytoplasmicMembrane, score: 10.00.
       0.500
EPF16832.1
KEGG: enc:ECL_01845 2.6e-224 cytochrome bd ubiquinol oxidase, subunit I; K00425 cytochrome bd-I oxidase subunit I; Psort location: CytoplasmicMembrane, score: 10.00.
       0.500
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.