STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF16364.1III protein, CoA-transferase family; Belongs to the CoA-transferase III family. (452 aa)    
Predicted Functional Partners:
EPF16582.1
KEGG: kva:Kvar_2922 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase.
    
 0.826
EPF17068.1
Phenylacetic acid degradation protein paaN; KEGG: aby:ABAYE2376 1.8e-200 paaZ; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase K02618; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.784
caiB
crotonobetainyl-CoA:carnitine CoA-transferase; Catalyzes the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA to L-carnitine to generate L-carnitinyl-CoA and gamma-butyrobetaine. Is also able to catalyze the reversible transfer of the CoA moiety from gamma-butyrobetainyl-CoA or L- carnitinyl-CoA to crotonobetaine to generate crotonobetainyl-CoA. Belongs to the CoA-transferase III family. CaiB subfamily.
  
     0.616
EPF20622.1
Citrate (pro-3S)-lyase, beta subunit; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.549
EPF15010.1
Nitroreductase family protein; KEGG: ddd:Dda3937_01900 6.7e-68 nitroreductase.
  
 
  0.543
EPF16363.1
Putative autoinducer-binding transcriptional regulator BpsR.
       0.522
EPF20650.1
2-methylcitrate dehydratase.
 
 
  0.516
EPF20481.1
Auxin efflux carrier.
 
  
 0.511
EPF20538.1
acyl-CoA dehydrogenase protein.
 
 
 0.498
sucD
succinate-CoA ligase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
  0.455
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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