STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF16542.1LysR substrate binding domain protein; KEGG: ctu:Ctu_06660 7.2e-13 ltrA; probable HTH-type transcriptional regulator LtrA; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
EPF16543.1
NAD dependent epimerase/dehydratase family protein; KEGG: eam:EAMY_2219 4.1e-100 yeeZ; dTDP-glucose 4,6-dehydratase; Psort location: Cytoplasmic, score: 8.96.
  
    0.678
EPF18637.1
Putative als operon regulatory protein AlsR; KEGG: shn:Shewana3_3435 2.3e-19 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.647
EPF16740.1
LysR substrate binding domain protein; KEGG: pmy:Pmen_3029 2.0e-36 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.581
EPF16948.1
LysR substrate binding domain protein; KEGG: ypy:YPK_1615 4.9e-72 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.548
EPF20187.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 7.3e-23 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.26; Belongs to the LysR transcriptional regulatory family.
  
     0.492
EPF18209.1
LysR substrate binding domain protein; KEGG: swd:Swoo_1123 8.0e-49 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.492
EPF20357.1
LysR substrate binding domain protein; KEGG: bac:BamMC406_2577 1.8e-60 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.473
EPF17605.1
LysR substrate binding domain protein; KEGG: ppw:PputW619_1229 1.2e-52 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.473
EPF16928.1
LysR substrate binding domain protein; KEGG: bac:BamMC406_5874 4.4e-96 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.456
EPF12924.1
LysR substrate binding domain protein; KEGG: rcu:RCOM_1814550 6.0e-28 Glycine cleavage system transcriptional activator, putative; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.456
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.