STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF13640.1LysR substrate binding domain protein; KEGG: hiq:CGSHiGG_09680 2.6e-34 DNA-binding transcriptional activator GcvA K03566; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
EPF15215.1
LysR substrate binding domain protein; KEGG: mct:MCR_1819 7.8e-14 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96; Belongs to the LysR transcriptional regulatory family.
  
     0.670
EPF20187.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 7.3e-23 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.26; Belongs to the LysR transcriptional regulatory family.
  
     0.652
EPF13861.1
LysR substrate binding domain protein; KEGG: swd:Swoo_1123 4.7e-44 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.26; Belongs to the LysR transcriptional regulatory family.
  
     0.649
EPF20652.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.641
EPF20362.1
LysR substrate binding domain protein; KEGG: apb:SAR116_2372 6.4e-24 transcriptional regulator, LysR family, putative; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.636
EPF17627.1
Putative als operon regulatory protein AlsR; KEGG: shn:Shewana3_3435 3.8e-26 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.26; Belongs to the LysR transcriptional regulatory family.
  
     0.633
EPF20677.1
LysR substrate binding domain protein; Belongs to the LysR transcriptional regulatory family.
  
     0.577
EPF15608.1
LysR substrate binding domain protein; KEGG: mct:MCR_1819 2.3e-35 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.558
EPF20484.1
LysR substrate binding domain protein; Belongs to the LysR transcriptional regulatory family.
  
     0.539
EPF15810.1
LysR substrate binding domain protein; KEGG: sbm:Shew185_0361 2.2e-13 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.535
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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