Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EPF13084.1 | EPF13085.1 | HMPREF0201_04376 | HMPREF0201_04377 | Hypothetical protein. | Peptidase, S54 family; KEGG: ebd:ECBD_0318 6.6e-45 intramembrane serine protease GlpG K02441; Psort location: CytoplasmicMembrane, score: 10.00. | 0.570 |
EPF13084.1 | EPF13086.1 | HMPREF0201_04376 | HMPREF0201_04378 | Hypothetical protein. | Glycerol-3-phosphate regulon repressor; KEGG: sbc:SbBS512_E4348 5.7e-55 transcriptional regulator, DeoR/GntR family; Psort location: Cytoplasmic, score: 9.97. | 0.545 |
EPF13085.1 | EPF13084.1 | HMPREF0201_04377 | HMPREF0201_04376 | Peptidase, S54 family; KEGG: ebd:ECBD_0318 6.6e-45 intramembrane serine protease GlpG K02441; Psort location: CytoplasmicMembrane, score: 10.00. | Hypothetical protein. | 0.570 |
EPF13085.1 | EPF13086.1 | HMPREF0201_04377 | HMPREF0201_04378 | Peptidase, S54 family; KEGG: ebd:ECBD_0318 6.6e-45 intramembrane serine protease GlpG K02441; Psort location: CytoplasmicMembrane, score: 10.00. | Glycerol-3-phosphate regulon repressor; KEGG: sbc:SbBS512_E4348 5.7e-55 transcriptional regulator, DeoR/GntR family; Psort location: Cytoplasmic, score: 9.97. | 0.757 |
EPF13086.1 | EPF13084.1 | HMPREF0201_04378 | HMPREF0201_04376 | Glycerol-3-phosphate regulon repressor; KEGG: sbc:SbBS512_E4348 5.7e-55 transcriptional regulator, DeoR/GntR family; Psort location: Cytoplasmic, score: 9.97. | Hypothetical protein. | 0.545 |
EPF13086.1 | EPF13085.1 | HMPREF0201_04378 | HMPREF0201_04377 | Glycerol-3-phosphate regulon repressor; KEGG: sbc:SbBS512_E4348 5.7e-55 transcriptional regulator, DeoR/GntR family; Psort location: Cytoplasmic, score: 9.97. | Peptidase, S54 family; KEGG: ebd:ECBD_0318 6.6e-45 intramembrane serine protease GlpG K02441; Psort location: CytoplasmicMembrane, score: 10.00. | 0.757 |