STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPF12980.1KEGG: rru:Rru_A2359 3.9e-111 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K12371; Psort location: CytoplasmicMembrane, score: 7.88. (327 aa)    
Predicted Functional Partners:
EPF12979.1
Dipeptide ABC transporter, permease protein DppC; KEGG: apb:SAR116_0601 7.5e-53 binding-protein-dependent transport systems inner membrane component K02034; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
EPF12978.1
KEGG: ecl:EcolC_0172 2.2e-172 dipeptide transporter permease DppB K12369; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.997
EPF12981.1
ABC transporter, ATP-binding protein; KEGG: pen:PSEEN1053 1.4e-97 dppF; dipeptide transporter ATP-binding subunit K12372; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the ABC transporter superfamily.
 
  
 
0.989
EPF16869.1
KEGG: bra:BRADO2619 3.8e-49 putative ABC transporter permease protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.981
EPF16346.1
Putative oligopeptide ABC transporter, permease protein AppC.
 
 0.974
EPF20610.1
Putative dipeptide ABC transporter, permease protein DppC.
 
 0.953
EPF16677.1
KEGG: bra:BRADO1095 1.6e-50 oppC; oligopeptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.950
EPF20172.1
Putative oligopeptide ABC transporter, permease protein AppC; KEGG: bmi:BMEA_B0781 4.9e-49 nikC; nickel transporter permease NikC K02034; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.930
EPF15844.1
ABC transporter, permease protein; KEGG: bmi:BMEA_B0781 3.0e-56 nikC; nickel transporter permease NikC K02034; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.900
EPF20611.1
Putative dipeptide ABC transporter, permease protein DppB.
 
 0.898
Your Current Organism:
Cedecea davisae
NCBI taxonomy Id: 566551
Other names: C. davisae DSM 4568, Cedecea davisae ATCC 33431, Cedecea davisae DSM 4568, Cedecea davisae str. DSM 4568, Cedecea davisae strain 005, Cedecea davisae strain DSM 4568
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