Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | rplD | GCA_001291445_04059 | GCA_001291445_04371 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; Forms part of the polypeptide exit tunnel. | 0.980 |
| def | rplI | GCA_001291445_04059 | GCA_001291445_03070 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; Binds to the 23S rRNA. | 0.979 |
| def | rplQ | GCA_001291445_04059 | GCA_001291445_04444 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein. | 0.992 |
| def | rplT | GCA_001291445_04059 | GCA_001291445_05635 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.979 |
| def | rplU | GCA_001291445_04059 | GCA_001291445_01392 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.982 |
| def | rplV | GCA_001291445_04059 | GCA_001291445_04375 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.996 |
| def | rpsF | GCA_001291445_04059 | GCA_001291445_03067 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.982 |
| def | rpsP | GCA_001291445_04059 | GCA_001291445_00818 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.978 |
| def | rpsT | GCA_001291445_04059 | GCA_001291445_01354 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; Binds directly to 16S ribosomal RNA. | 0.979 |
| def | tig | GCA_001291445_04059 | GCA_001291445_01420 | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Unannotated protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.982 |
| rplD | def | GCA_001291445_04371 | GCA_001291445_04059 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.980 |
| rplD | rplI | GCA_001291445_04371 | GCA_001291445_03070 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds to the 23S rRNA. | 0.999 |
| rplD | rplQ | GCA_001291445_04371 | GCA_001291445_04444 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein. | 0.999 |
| rplD | rplT | GCA_001291445_04371 | GCA_001291445_05635 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplD | rplU | GCA_001291445_04371 | GCA_001291445_01392 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplD | rplV | GCA_001291445_04371 | GCA_001291445_04375 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| rplD | rpsF | GCA_001291445_04371 | GCA_001291445_03067 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplD | rpsP | GCA_001291445_04371 | GCA_001291445_00818 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| rplD | rpsT | GCA_001291445_04371 | GCA_001291445_01354 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Binds directly to 16S ribosomal RNA. | 0.999 |
| rplD | tig | GCA_001291445_04371 | GCA_001291445_01420 | Unannotated protein; Forms part of the polypeptide exit tunnel. | Unannotated protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.990 |
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