LINJ_27_2020 protein (Leishmania infantum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LINJ_27_2020

Putative RNA-binding protein. (449 aa)

Predicted Functional Partners:

LINJ_07_1020

0.763

LINJ_03_0500

0.668

LINJ_24_1120

0.663

LINJ_08_1090

0.660

LINJ_03_0180

0.649

LINJ_31_0170

0.645

LINJ_30_2600

0.620

LINJ_24_1860

0.620

LINJ_30_0560

0.591

LINJ_21_1820

0.588

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LINJ_03_0180	LINJ_03_0500	A4HRT0	E9AG41	Putative U2 splicing auxiliary factor.	Uncharacterized protein.	0.999
LINJ_03_0180	LINJ_07_1020	A4HRT0	A4HTB3	Putative U2 splicing auxiliary factor.	Splicing factor ptsr1-like protein.	0.885
LINJ_03_0180	LINJ_08_1090	A4HRT0	A4HTQ1	Putative U2 splicing auxiliary factor.	Uncharacterized protein.	0.763
LINJ_03_0180	LINJ_21_1820	A4HRT0	A4HZF8	Putative U2 splicing auxiliary factor.	Putative RNA helicase.	0.675
LINJ_03_0180	LINJ_24_1120	A4HRT0	A4I0U7	Putative U2 splicing auxiliary factor.	Putative pre-mRNA splicing factor.	0.785
LINJ_03_0180	LINJ_24_1860	A4HRT0	E9AH86	Putative U2 splicing auxiliary factor.	Uncharacterized protein.	0.716
LINJ_03_0180	LINJ_27_2020	A4HRT0	A4I2Y0	Putative U2 splicing auxiliary factor.	Putative RNA-binding protein.	0.649
LINJ_03_0180	LINJ_30_0560	A4HRT0	A4I582	Putative U2 splicing auxiliary factor.	Nuclear cap-binding protein subunit 2.	0.744
LINJ_03_0180	LINJ_30_2600	A4HRT0	A4I5T6	Putative U2 splicing auxiliary factor.	Putative RNA-binding protein.	0.716
LINJ_03_0500	LINJ_03_0180	E9AG41	A4HRT0	Uncharacterized protein.	Putative U2 splicing auxiliary factor.	0.999
LINJ_03_0500	LINJ_07_1020	E9AG41	A4HTB3	Uncharacterized protein.	Splicing factor ptsr1-like protein.	0.970
LINJ_03_0500	LINJ_08_1090	E9AG41	A4HTQ1	Uncharacterized protein.	Uncharacterized protein.	0.943
LINJ_03_0500	LINJ_21_1820	E9AG41	A4HZF8	Uncharacterized protein.	Putative RNA helicase.	0.897
LINJ_03_0500	LINJ_24_1120	E9AG41	A4I0U7	Uncharacterized protein.	Putative pre-mRNA splicing factor.	0.953
LINJ_03_0500	LINJ_24_1860	E9AG41	E9AH86	Uncharacterized protein.	Uncharacterized protein.	0.704
LINJ_03_0500	LINJ_27_2020	E9AG41	A4I2Y0	Uncharacterized protein.	Putative RNA-binding protein.	0.668
LINJ_03_0500	LINJ_30_0560	E9AG41	A4I582	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.874
LINJ_03_0500	LINJ_30_2600	E9AG41	A4I5T6	Uncharacterized protein.	Putative RNA-binding protein.	0.704
LINJ_07_1020	LINJ_03_0180	A4HTB3	A4HRT0	Splicing factor ptsr1-like protein.	Putative U2 splicing auxiliary factor.	0.885
LINJ_07_1020	LINJ_03_0500	A4HTB3	E9AG41	Splicing factor ptsr1-like protein.	Uncharacterized protein.	0.970