LINJ_31_2750 protein (Leishmania infantum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LINJ_31_2750

Uncharacterized protein. (687 aa)

Predicted Functional Partners:

LINJ_08_0150

0.781

GLF

0.751

LINJ_34_2280

0.751

LINJ_24_1580

0.652

LINJ_17_0690

0.595

LINJ_22_0008

0.591

LINJ_10_0900

0.531

LINJ_25_1320

0.527

LINJ_36_0230

0.514

RPA1

0.464

Your Current Organism:

Leishmania infantum

NCBI taxonomy Id: 5671
Other names: L. infantum, Leishmania (Leishmania) infantum, Leishmania donovani infantum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLF	LINJ_08_0150	A4HXP6	A4HTG5	UDP-galactopyranose mutase.	Putative DNA repair protein.	0.812
GLF	LINJ_10_0900	A4HXP6	A4HUJ7	UDP-galactopyranose mutase.	Putative nuclear transport factor 2.	0.505
GLF	LINJ_22_0008	A4HXP6	E9AGY7	UDP-galactopyranose mutase.	Uncharacterized protein.	0.629
GLF	LINJ_24_1580	A4HXP6	A4I0Z0	UDP-galactopyranose mutase.	Uncharacterized protein.	0.751
GLF	LINJ_25_1320	A4HXP6	A4I1H3	UDP-galactopyranose mutase.	NPL4 domain-containing protein.	0.668
GLF	LINJ_31_2750	A4HXP6	A4I771	UDP-galactopyranose mutase.	Uncharacterized protein.	0.751
GLF	LINJ_36_0230	A4HXP6	A4ICW6	UDP-galactopyranose mutase.	Putative SET domain protein.	0.614
GLF	RPA1	A4HXP6	A4I3Q8	UDP-galactopyranose mutase.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.805
LINJ_08_0150	GLF	A4HTG5	A4HXP6	Putative DNA repair protein.	UDP-galactopyranose mutase.	0.812
LINJ_08_0150	LINJ_10_0900	A4HTG5	A4HUJ7	Putative DNA repair protein.	Putative nuclear transport factor 2.	0.926
LINJ_08_0150	LINJ_22_0008	A4HTG5	E9AGY7	Putative DNA repair protein.	Uncharacterized protein.	0.999
LINJ_08_0150	LINJ_24_1580	A4HTG5	A4I0Z0	Putative DNA repair protein.	Uncharacterized protein.	0.922
LINJ_08_0150	LINJ_25_1320	A4HTG5	A4I1H3	Putative DNA repair protein.	NPL4 domain-containing protein.	0.928
LINJ_08_0150	LINJ_31_2750	A4HTG5	A4I771	Putative DNA repair protein.	Uncharacterized protein.	0.781
LINJ_08_0150	LINJ_34_2280	A4HTG5	A4IA22	Putative DNA repair protein.	Uncharacterized protein.	0.812
LINJ_08_0150	RPA1	A4HTG5	A4I3Q8	Putative DNA repair protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.897
LINJ_10_0900	GLF	A4HUJ7	A4HXP6	Putative nuclear transport factor 2.	UDP-galactopyranose mutase.	0.505
LINJ_10_0900	LINJ_08_0150	A4HUJ7	A4HTG5	Putative nuclear transport factor 2.	Putative DNA repair protein.	0.926
LINJ_10_0900	LINJ_22_0008	A4HUJ7	E9AGY7	Putative nuclear transport factor 2.	Uncharacterized protein.	0.937
LINJ_10_0900	LINJ_24_1580	A4HUJ7	A4I0Z0	Putative nuclear transport factor 2.	Uncharacterized protein.	0.757