Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115011360Neurofilament medium polypeptide-like. (434 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.737
LOC115019686
Tumor necrosis factor receptor superfamily member 6-like.
    
  0.517
LOC115006432
Histone chaperone asf1b-B-like.
    
 0.514
LOC115011705
Histone chaperone asf1b-B.
    
 0.514
rps27a
Ribosomal protein S27a.
   
  0.491
LOC115013761
Protein HIRA.
    
 0.490
rps15
Ribosomal protein S15.
   
 
 0.490
LOC115022740
40S ribosomal protein S28.
   
   0.473
rps11
Ribosomal protein S11.
   
 
 0.470
actl6a
Actin like 6A.
    
 0.468
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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