Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115007889Copine-1-like. (562 aa)    
Predicted Functional Partners:
LOC115009598
OTU domain-containing protein 7A-like.
    
 
 0.784
prkrip1
PRKR interacting protein 1.
      
 0.769
glrx5
Glutaredoxin 5.
      
 0.763
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.735
nfs1
NFS1 cysteine desulfurase.
      
 0.645
rnaseh2b
Ribonuclease H2 subunit B.
   
 
 0.617
rnaseh2a
Ribonuclease H2 subunit A.
   
 
 0.563
VAMP3
Vesicle associated membrane protein 3.
   
 
  0.505
LOC115024349
acyl-CoA-binding domain-containing protein 4-like.
      
 0.493
acbd5
acyl-CoA binding domain containing 5.
      
 0.493
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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