Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
UBE3AUbiquitin protein ligase E3A. (895 aa)    
Predicted Functional Partners:
psmc1
Proteasome 26S subunit, ATPase 1.
    
 
 0.980
psmd14
Proteasome 26S subunit, non-ATPase 14.
    
 
 0.976
tat
Tyrosine aminotransferase.
    
   0.974
uchl5
Ubiquitin C-terminal hydrolase L5.
    
 
 0.969
psmc4
Proteasome 26S subunit, ATPase 4.
    
 
 0.965
psmc3
Proteasome 26S subunit, ATPase 3.
    
 
 0.958
psmd6
Proteasome 26S subunit, non-ATPase 6.
    
   0.952
LOC115023924
Neuralized-like protein 4.
    
 
 0.952
psmd12
Proteasome 26S subunit, non-ATPase 12.
   
 
 0.952
faf2
Fas associated factor family member 2.
    
   0.951
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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