Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115011889Homeobox protein Hox-B5a-like. (311 aa)    
Predicted Functional Partners:
LOC115010537
Homeobox protein Hox-C5a-like.
   
   0.939
HOXA7
Homeobox protein Hox-A7.
   
   0.928
LOC115011893
Homeobox protein Hox-B4a.
   
 
 0.910
LOC115011890
Homeobox protein Hox-B6a-like.
   
 
 0.909
LOC115025067
Homeobox protein Hox-B6b.
   
 
 0.909
LOC115011891
Homeobox protein Hox-B7-B-like.
   
 
 0.907
hoxc4
Homeobox C4.
   
 
 0.823
LOC115011885
Homeobox protein Hox-B3a.
   
  
 0.755
hoxd4
Homeobox D4.
   
   0.745
LOC115009398
pre-B-cell leukemia transcription factor 1-like.
    
 0.741
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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