Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ube2zUbiquitin conjugating enzyme E2 Z. (405 aa)    
Predicted Functional Partners:
LOC115007954
Ubiquitin-like modifier-activating enzyme 1.
  
 0.944
uba1
Ubiquitin like modifier activating enzyme 1.
  
 0.944
uba6
Ubiquitin like modifier activating enzyme 6.
  
 0.944
rps27a
Ribosomal protein S27a.
    
 0.917
ubb
Ubiquitin B.
    
 0.891
wdr12
WD repeat domain 12.
    
 0.889
trip12
Thyroid hormone receptor interactor 12.
   
 0.862
LOC115006656
ubiquitin-60S ribosomal protein L40.
    
 0.859
LOC115022757
ubiquitin-60S ribosomal protein L40-like.
    
 0.859
stox1
Storkhead box 1.
    
   0.857
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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