Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atp5pdATP synthase peripheral stalk subunit d. (161 aa)    
Predicted Functional Partners:
atp5po
ATP synthase peripheral stalk subunit OSCP.
   
 0.999
atp5f1e
ATP synthase F1 subunit epsilon.
   
 0.999
atp5me
ATP synthase membrane subunit e.
   
 0.999
atp5md
ATP synthase membrane subunit DAPIT.
   
 0.999
atp5pb
ATP synthase peripheral stalk-membrane subunit b.
   
 0.999
atp5f1d
ATP synthase F1 subunit delta.
   
 0.999
atp5f1c
ATP synthase F1 subunit gamma.
   
 0.999
LOC115022769
ATP synthase subunit g, mitochondrial-like.
   
 0.999
LOC115019046
ATP synthase subunit g, mitochondrial-like.
   
 0.999
atp5f1b
ATP synthase F1 subunit beta.
   
 0.999
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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