Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
romo1Reactive oxygen species modulator 1. (79 aa)    
Predicted Functional Partners:
timm21
Translocase of inner mitochondrial membrane 21.
    
 0.968
timm17b
Translocase of inner mitochondrial membrane 17B.
   
 0.954
timm17a
Translocase of inner mitochondrial membrane 17A.
   
 0.954
timm23
Translocase of inner mitochondrial membrane 23.
    
 0.953
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
 
 0.925
LOC115016828
Cytochrome b-c1 complex subunit 9.
   
  
 0.889
NDUFA13
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like.
   
  
 0.874
LOC115016619
Cytochrome c oxidase subunit 5B, mitochondrial-like.
   
 
 0.872
polr2l
RNA polymerase II subunit L.
   
  
 0.863
oma1
OMA1 zinc metallopeptidase.
    
 
 0.861
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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