Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115008369Complement C1q subcomponent subunit B-like. (308 aa)    
Predicted Functional Partners:
MEGF11
Multiple epidermal growth factor-like domains protein 11.
     
  0.909
scarf1
Scavenger receptor class F member 1.
     
  0.909
ENSCGOP00000027075
Multiple EGF-like-domains 11.
     
  0.909
megf10
Multiple EGF like domains 10.
     
  0.909
LOC115010607
Low-density lipoprotein receptor-related protein 1-like.
     
  0.900
LOC115007043
Calreticulin-like.
     
  0.900
LOC115022065
Calreticulin-like.
     
  0.900
suox
Sulfite oxidase.
    
   0.412
ENSCGOP00000056735
annotation not available
    
 0.412
LOC115021722
Histone-lysine N-methyltransferase SETDB1-B-like.
    
  0.409
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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