Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ntrk3Neurotrophic receptor tyrosine kinase 3. (837 aa)    
Predicted Functional Partners:
bdnf
Brain derived neurotrophic factor.
   
 0.920
plcg2
Phospholipase C gamma 2.
    
 0.899
LOC115006734
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1-like.
    
 0.899
plcg1
Phospholipase C gamma 1.
    
 0.899
ENSCGOP00000053093
Nerve growth factor receptor a (TNFR superfamily, member 16).
   
 0.850
LOC115008416
Nerve growth factor-like.
     
 0.847
ntf3
Neurotrophin 3.
    
 0.847
LOC115012393
Uncharacterized LOC115012393.
    
 0.825
sqstm1
Sequestosome 1.
    
 0.809
egf
Epidermal growth factor.
   
 0.794
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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