Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl46Mitochondrial ribosomal protein L46. (293 aa)    
Predicted Functional Partners:
mrpl47
Mitochondrial ribosomal protein L47.
   
 0.997
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.996
mrpl55
Mitochondrial ribosomal protein L55.
   
 0.996
mrpl2
Mitochondrial ribosomal protein L2.
   
 0.995
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
   
  0.993
mrpl16
Mitochondrial ribosomal protein L16.
   
 0.993
mrpl12
Mitochondrial ribosomal protein L12.
   
 0.993
mrpl3
Mitochondrial ribosomal protein L3.
   
 0.992
mrpl15
Mitochondrial ribosomal protein L15.
   
 0.992
ENSCGOP00000039830
Mitochondrial ribosomal protein L21.
   
 0.992
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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