Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
thoc7THO complex 7. (203 aa)    
Predicted Functional Partners:
thoc3
THO complex 3.
   
 0.999
thoc2
THO complex 2.
   
 0.999
thoc5
THO complex 5.
   
 0.999
thoc1
THO complex 1.
   
 0.999
alyref
Aly/REF export factor.
   
 0.996
sarnp
SAP domain containing ribonucleoprotein.
   
 0.991
chtop
Chromatin target of PRMT1.
    
 0.984
LOC115008047
THO complex subunit 4-like.
   
 0.972
ddx39a
DExD-box helicase 39A.
   
 0.969
DDX39A
ATP-dependent RNA helicase DDX39A-like.
   
 0.969
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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