Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
nipa1NIPA magnesium transporter 1. (308 aa)    
Predicted Functional Partners:
LOC115007396
Cytoplasmic FMR1-interacting protein 1 homolog.
   
  
 0.759
baz1b
Bromodomain adjacent to zinc finger domain 1B.
      
 0.652
LOC115027687
Atlastin-1-like.
      
 0.650
LOC115017610
Insulin-like growth factor-binding protein 2-A.
      
 0.646
LOC115018217
Spartin-like.
      
 0.644
washc5
WASH complex subunit 5.
      
 0.632
ENSCGOP00000019525
Receptor accessory protein 1.
      
 0.617
slc30a1
Solute carrier family 30 member 1.
      
 0.598
slc33a1
Solute carrier family 33 member 1.
   
  
 0.580
LOC115006186
Spastin-like.
      
 0.512
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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