Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115008805SRSF protein kinase 2-like. (550 aa)    
Predicted Functional Partners:
rbm39
RNA binding motif protein 39.
    
 
 0.763
u2af2
U2 small nuclear RNA auxiliary factor 2.
    
 
 0.712
LOC115012484
Splicing factor U2AF 65 kDa subunit-like.
    
 
 0.712
lemd3
LEM domain containing 3.
    
 
 0.664
sf1
Splicing factor 1.
   
 
 0.639
LOC115021210
Dual specificity protein kinase CLK2-like.
   
 
 0.619
LOC115014567
Dual specificity protein kinase CLK4-like.
   
 
 0.619
LOC115015373
Dual specificity protein kinase CLK2-like.
   
 
 0.619
zrsr2
Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.
    
 
 0.611
LOC115018679
Serine/arginine-rich splicing factor 1-like.
    
 
 0.606
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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