Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybx1Y-box binding protein 1. (299 aa)    
Predicted Functional Partners:
alyref
Aly/REF export factor.
   
 0.937
rpl6
Ribosomal protein L6.
   
 
 0.910
LOC115017028
Serine/arginine-rich splicing factor 9-like.
  
 0.899
LOC115021244
Probable ATP-dependent RNA helicase ddx6.
  
 0.897
LOC115015501
Probable ATP-dependent RNA helicase DDX6.
  
 0.897
eif4a3
Eukaryotic translation initiation factor 4A3.
  
 0.897
larp7
La ribonucleoprotein 7, transcriptional regulator.
   
 0.847
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.844
c1qbp
Complement C1q binding protein.
   
   0.841
ncbp2
Nuclear cap binding protein subunit 2.
    
  0.839
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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