Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppihPeptidylprolyl isomerase H. (229 aa)    
Predicted Functional Partners:
prpf3
pre-mRNA processing factor 3.
    
 0.997
snu13
Small nuclear ribonucleoprotein 13.
  
 0.993
prpf31
pre-mRNA processing factor 31.
    
 0.991
bag2
BCL2 associated athanogene 2.
    
   0.964
ENSCGOP00000051726
annotation not available
   
 0.963
ENSCGOP00000051749
Small nuclear ribonucleoprotein polypeptide F.
   
 0.963
lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.954
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.951
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.951
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
  0.949
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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