Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DXODecapping exoribonuclease. (422 aa)    
Predicted Functional Partners:
xrn2
5'-3' exoribonuclease 2.
   
 
 0.996
exosc7
Exosome component 7.
   
   0.976
recql5
RecQ like helicase 5.
    
   0.969
rpap2
RNA polymerase II associated protein 2.
   
   0.954
exosc4
Exosome component 4.
   
 
 0.933
polr2g
RNA polymerase II subunit G.
    
 
 0.912
rprd1b
Regulation of nuclear pre-mRNA domain containing 1B.
    
 
 0.872
ENSCGOP00000037045
annotation not available
    
 
 0.872
LOC115015316
Regulation of nuclear pre-mRNA domain-containing protein 1A-like.
    
 
 0.872
POLR2B
RNA polymerase II subunit B.
   
   0.871
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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