Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stk19Serine/threonine kinase 19. (254 aa)    
Predicted Functional Partners:
uvssa
UV stimulated scaffold protein A.
    
 
 0.766
skiv2l
Ski2 like RNA helicase.
   
  
 0.763
ddb1
Damage specific DNA binding protein 1.
    
   0.760
polr2l
RNA polymerase II subunit L.
    
   0.760
polr2k
RNA polymerase II subunit K.
    
   0.760
polr2i
RNA polymerase II subunit I.
    
   0.760
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
   0.760
polr2d
RNA polymerase II subunit D.
    
   0.760
polr2g
RNA polymerase II subunit G.
    
   0.760
ercc6
ERCC excision repair 6, chromatin remodeling factor.
    
   0.760
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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