Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dgcr8DGCR8 microprocessor complex subunit. (780 aa)    
Predicted Functional Partners:
drosha
Drosha ribonuclease III.
    
 0.999
dicer1
Dicer 1, ribonuclease III.
    
 0.978
xpo5
Exportin 5.
   
  
 0.892
mrpl44
Mitochondrial ribosomal protein L44.
    
 0.888
tarbp2
TARBP2 subunit of RISC loading complex.
    
 0.841
prkra
Protein activator of interferon induced protein kinase EIF2AK2.
    
 0.841
LOC115003516
Enhancer of rudimentary homolog.
    
 
 0.825
ERH
ERH mRNA splicing and mitosis factor.
    
 
 0.825
ube2v2
Ubiquitin conjugating enzyme E2 V2.
      
 0.817
rfc4
Replication factor C subunit 4.
      
 0.817
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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