Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
syt12Synaptotagmin 12. (429 aa)    
Predicted Functional Partners:
VAMP3
Vesicle associated membrane protein 3.
    
 0.726
snap25
Synaptosome associated protein 25.
   
 0.662
ENSCGOP00000038604
annotation not available
   
 0.662
LOC115004002
Intersectin-2-like.
     
 0.656
itsn2
Intersectin 2.
     
 0.656
mpc2
Mitochondrial pyruvate carrier 2.
      
 0.634
LOC115014516
Syntaxin-3-like.
    
 0.631
stx1a
Syntaxin 1A.
    
 0.631
LOC115006806
Syntaxin-3-like.
    
 0.631
LOC115005088
syntaxin-1B.
    
 0.631
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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