Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbl1RB transcriptional corepressor like 1. (1060 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor Dp-1.
   
 0.999
LOC115022834
Transcription factor E2F5-like.
   
 0.998
e2f4
E2F transcription factor 4.
   
 0.998
CCNE2
G1/S-specific cyclin-E2-like.
   
 0.995
ccne1
Cyclin E1.
   
 0.995
LOC115021414
G1/S-specific cyclin-E2-like.
   
 0.995
e2f1
E2F transcription factor 1.
   
 0.995
LOC115009437
G1/S-specific cyclin-D2-like.
    
 0.994
LOC115009127
G1/S-specific cyclin-D1-like.
    
 0.994
LOC115028528
G1/S-specific cyclin-D2-like.
    
 0.994
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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