lingo1 protein (Cottoperca gobio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

lingo1

Leucine rich repeat and Ig domain containing 1. (615 aa)

Predicted Functional Partners:

ENSCGOP00000053093

0.908

LOC115017915

0.765

ENSCGOP00000053459

0.765

LOC115019666

0.717

rtn4r

0.688

LOC115018181

0.660

rtn1

0.658

LOC115023504

0.658

LOC115005582

0.658

ENSCGOP00000033444

0.603

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCGOP00000033444	ENSCGOP00000053093	ENSCGOP00000033444	ENSCGOP00000053093	annotation not available	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.413
ENSCGOP00000033444	ENSCGOP00000053459	ENSCGOP00000033444	ENSCGOP00000053459	annotation not available	annotation not available	0.727
ENSCGOP00000033444	LOC115017915	ENSCGOP00000033444	ENSCGOP00000025078	annotation not available	Oligodendrocyte-myelin glycoprotein-like.	0.643
ENSCGOP00000033444	lingo1	ENSCGOP00000033444	ENSCGOP00000001915	annotation not available	Leucine rich repeat and Ig domain containing 1.	0.603
ENSCGOP00000053093	ENSCGOP00000033444	ENSCGOP00000053093	ENSCGOP00000033444	Nerve growth factor receptor a (TNFR superfamily, member 16).	annotation not available	0.413
ENSCGOP00000053093	ENSCGOP00000053459	ENSCGOP00000053093	ENSCGOP00000053459	Nerve growth factor receptor a (TNFR superfamily, member 16).	annotation not available	0.800
ENSCGOP00000053093	LOC115005582	ENSCGOP00000053093	ENSCGOP00000051795	Nerve growth factor receptor a (TNFR superfamily, member 16).	reticulon-3-B-like.	0.501
ENSCGOP00000053093	LOC115017915	ENSCGOP00000053093	ENSCGOP00000025078	Nerve growth factor receptor a (TNFR superfamily, member 16).	Oligodendrocyte-myelin glycoprotein-like.	0.800
ENSCGOP00000053093	LOC115018181	ENSCGOP00000053093	ENSCGOP00000018145	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon-2-like.	0.501
ENSCGOP00000053093	LOC115019666	ENSCGOP00000053093	ENSCGOP00000027596	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon-4-like.	0.501
ENSCGOP00000053093	LOC115023504	ENSCGOP00000053093	ENSCGOP00000049778	Nerve growth factor receptor a (TNFR superfamily, member 16).	reticulon-3-B-like.	0.501
ENSCGOP00000053093	lingo1	ENSCGOP00000053093	ENSCGOP00000001915	Nerve growth factor receptor a (TNFR superfamily, member 16).	Leucine rich repeat and Ig domain containing 1.	0.908
ENSCGOP00000053093	rtn1	ENSCGOP00000053093	ENSCGOP00000018587	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon 1.	0.501
ENSCGOP00000053093	rtn4r	ENSCGOP00000053093	ENSCGOP00000007769	Nerve growth factor receptor a (TNFR superfamily, member 16).	Reticulon 4 receptor.	0.943
ENSCGOP00000053459	ENSCGOP00000033444	ENSCGOP00000053459	ENSCGOP00000033444	annotation not available	annotation not available	0.727
ENSCGOP00000053459	ENSCGOP00000053093	ENSCGOP00000053459	ENSCGOP00000053093	annotation not available	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.800
ENSCGOP00000053459	LOC115005582	ENSCGOP00000053459	ENSCGOP00000051795	annotation not available	reticulon-3-B-like.	0.660
ENSCGOP00000053459	LOC115018181	ENSCGOP00000053459	ENSCGOP00000018145	annotation not available	Reticulon-2-like.	0.660
ENSCGOP00000053459	LOC115019666	ENSCGOP00000053459	ENSCGOP00000027596	annotation not available	Reticulon-4-like.	0.718
ENSCGOP00000053459	LOC115023504	ENSCGOP00000053459	ENSCGOP00000049778	annotation not available	reticulon-3-B-like.	0.660