Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lyarLy1 antibody reactive. (338 aa)    
Predicted Functional Partners:
rrp1b
Ribosomal RNA processing 1B.
   
 
 0.969
rpf2
Ribosome production factor 2 homolog.
   
   0.958
gpatch4
G-patch domain containing 4.
   
 
 0.944
nhp2
NHP2 ribonucleoprotein.
   
 
 0.939
pinx1
PIN2 (TERF1) interacting telomerase inhibitor 1.
   
   0.927
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
   0.920
tma16
Translation machinery associated 16 homolog.
   
 
 0.912
ENSCGOP00000020427
Purinergic receptor P2Y11.
   
   0.908
LOC115011761
Suppressor of SWI4 1 homolog.
   
   0.908
rrs1
Ribosome biogenesis regulator 1 homolog.
   
 
 0.908
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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