STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115007170Tripartite motif-containing protein 16-like. (553 aa)    
Predicted Functional Partners:
ubb
Ubiquitin B.
    
  0.542
rps27a
Ribosomal protein S27a.
    
  0.540
zfand4
Zinc finger AN1-type containing 4.
    
  0.486
LOC115013803
Ubiquitin-conjugating enzyme E2 L3.
    
  0.481
LOC115017511
Caspase-1-like.
   
 0.469
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
    
  0.468
LOC115013360
Ubiquitin-like protein 4A.
    
  0.467
ENSCGOP00000024769
annotation not available
    
  0.467
ENSCGOP00000048404
annotation not available
    
  0.467
ENSCGOP00000048492
ISG15 ubiquitin like modifier.
    
  0.467
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.