Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sac3d1SAC3 domain containing 1. (398 aa)    
Predicted Functional Partners:
pcid2
PCI domain containing 2.
   
 
 0.913
ENSCGOP00000025322
SEM1 26S proteasome complex subunit.
    
 
 0.908
nxf1
Nuclear RNA export factor 1.
    
 
 0.904
vps26a
VPS26, retromer complex component A.
    
   0.888
rae1
Ribonucleic acid export 1.
    
 
 0.871
tmem160
Transmembrane protein 160.
      
 0.846
LOC115015886
Transcription and mRNA export factor ENY2-2-like.
    
 
 0.841
eny2
ENY2 transcription and export complex 2 subunit.
    
 
 0.841
LOC115008493
ATP-dependent RNA helicase DDX19A-like.
    
 
 0.810
ddx39a
DExD-box helicase 39A.
    
 
 0.798
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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