Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bckdkLeucine rich repeats and WD repeat domain containing 1. (737 aa)    
Predicted Functional Partners:
orc3
Origin recognition complex subunit 3.
    
 0.996
orc5
Origin recognition complex subunit 5.
    
 0.995
orc2
Origin recognition complex subunit 2.
    
 0.993
ORC4
Origin recognition complex subunit 4-like.
    
 0.980
LOC115019604
Origin recognition complex subunit 4-like.
    
 
 0.959
orc1
Origin recognition complex subunit 1.
    
 0.944
vwa5b2
Von Willebrand factor A domain containing 5B2.
    
 
 0.792
ticrr
TOPBP1 interacting checkpoint and replication regulator.
    
 
 0.753
skp2
S-phase kinase associated protein 2.
    
 
 0.747
LOC115009801
Nucleosome assembly protein 1-like 4.
      
 0.638
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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